Prediction of Translation Initiation ATG

A program for identifying the initiation codons in cDNA sequences.

Salamov, AA., Nishikawa, T., Swindells, MB

ATGpr can be used to;

predict whether an initiation codon is present or absent in a piece of cDNA.
predict which ATG is the initiation codon for cases where a codon appears to be present.

The method, which uses linear discriminant analysis, has been rigorously tested on a 660 sequence, non-redundant dataset. A paper describing the method has been accepted for publication in Bioinformatics.

From this page you can;

run the program (see below).
read the manuscript.
take a list of the 660 sequences used for prediction.
take a list of the 133 sequences used for assessing Kozak's rule.